miRabel logo

A simple and efficient miRNA target prediction tool

New web interface: Data and predictions remain the same
The previous version is still available here

miRabel

News: roll

new This is a new version of miRabel. Here are the main changes:

  • Export buttons are working again.
  • When searching by miRNA, gene names are followed by three clickable icons for visiting the NCBI, the GeneCards and the Ensembl page of the gene, respectively.
  • When searching by gene, miRNA names are followed by one clickable icon for visiting the miRBase page of the miRNA.
  • When searching by pathway, pathway names are followed by one clickable icon for visiting the KEGG page of the pathway.

Development: roll

By:

  • TIBS team from LITIS lab, part of the University of Rouen Normandy.
  • Aurélien QUILLET, Gaëtan FERRY and Ilyes ZERDANE, based on an application from Chadi SAAD.
For:
  • Nordic lab, part of the INSERM and of the University of Rouen Normandy.

Information: roll

miRabel is cited 98 times on Google Scholar...
This tool uses data from MiRanda, Pita, SVMicrO and TargetScan prediction tools, as well as from miRwalk database.
Pathway database comes from KEGG as well as the gene database.
MicroRNA database is from miRbase.

References: roll

The main reference for miRabel is:

  • A. Quillet, C. Saad, G. Ferry, Y. Anouar, N. Vergne, T. Lecroq and C. Dubessy
    Improving bioinformatics prediction of microRNA targets by ranks aggregation
    Frontiers in Genetics 10 (2020) 1330. DOI PubMed
The following can also be relevant:
  • A. Quillet, Y. Anouar, T. Lecroq, C. Dubessy
    Prediction methods for microRNA targets in bilaterian animals: Toward a better understanding by biologists
    Comput Struct Biotechnol J. 19 (2021) 5811-5825. DOI PubMed

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